Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015804397.1_cds_XP_016488568.1_7883
CDS Infomation

[gene=LOC107808528] [db_xref=GeneID:107808528] [protein=valine--tRNA ligase, mitochondrial 1-like isoform X4] [protein_id=XP_016488568.1] [location=join(245..247,321..398,809..871,1039..1211,1341..1413,2390..2455,2529..2612,3666..3736,3894..3900,3965..4048,4158..4237,4397..4454,4542..4844,4944..5114,5937..6136,6503..6908,7226..7477,7567..8067,8525..8631,9716..9815,10619..10767,11312..11465)] [gbkey=CDS]
Sequence

ATGGCGCTGGCCGCAGCTGCATCAGATGGAAAGGAATTAACTCCTGAAGAATTGGAAAGG
AAAAAGAAAAAGGAAGAAAAGGCCAAAGAGAAAGAATTGAAAAAACTCAAGGCTGCACAA
AAAGTGGAATTAGCAGCAAAACAGGCACAAGCCGCCTCCAATGTGTCAAAGACAGCTAAG
AAGAAGACCTCAAAAAGGGAAGGTGAAGAAAAGCAAAATCCTAAGGATTATGTGGAACCA
GAAACACCTCTGGGGGAGAAGAAGCAGCTCTCCTGTAAAATGGCAAAGACTTATAATCCC
GGTGTTGTAGAGAAATCGTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTCACTGCAGAC
CCAAACAACTCTAAACCTGCTTTTGTGATGGTCTTGCCCCCACCAAATGTGACTGGTGCT
CTCCATATAGGACATGCCCTGACTGCTGCCATCGAGGACACAATTATTCGTTGGCGGAGA
ATGTCTGGATACAATACCTTGTGGATCCCAGGGATGGATCATGCTGGGATCGCAACCCAG
GTTGTTGTGGAGAAAAAGATCATGCGGGAGAGGAATTTGACTAGACATGATATTGGTAGG
GAGAACTTTAAAAGCCAAGTCTGGAATTGGAAGAATGAGTATGGAGGTACTATTTTGAAG
CAGTTACGTCGCCTGGGTGCATCACTTGATTGGTCTCGTGAGTGCTTTACCATGGATGAG
AAAAGGTCTAAGGCTGTTACTGAAGCATTTGTTAGGCTGTCCAATAAAGGTCTTATATAC
AGGGCTCCACGTATGGTGCATTGGGATTGTATCTTGCGTACTGCAATCTCTGATATTGAG
GTTGAATATACAGACATCAAAGAGAGGACACTTCTGAACGTTCCTGGATATGAGGATCCT
GTGGAGTTCGGGGTGCTGACATCATTTGCTTACCCCTTGGAAGGTGGCCTTGGTGAAATT
GTTGTGGCGACCACCAGAATTGAAACTATGCTTGGTGATACTGCAATTGCTATACATCCT
GAAGACAAAAGATACAGTCACCTTCATGGGAAATTTGCTATTCATCCATTCAATGAAAGA
AAGCTTCCAATAGTTTGTGATGAAATACTAGTAGATATGAACTTCGGGACTGGTGCTGTT
AAGATAACTCCAGCCCATGATCCTAATGATTTTGAGGTTGGACAGCGTCACAAACTTGAA
TTCATAAGTATTTTTACTGATGATGGGAAAATAAATAGGAATGCAGGTGCGGACTTTGAA
GGAATGCCTCGTTTCAAAGCTCGTGTCACTGTAACTGAAGCTTTAAAGGAAAAGGGTCTC
TACAGGGGTGCTAAGGATAATGAGATGCGCCTTGGGATTTGTTCAAGAAGCAATGATGTA
GTGGAACCTCTTATAAAGCCCCAGTGGTTTGTCAACTGCAAAAGTATGGCCAAACAGGCT
TTGGATGCTGTTATGGATGATGACAATCGGAAAATGGAGATCATCCCAAAACAATATGCT
GCTGAATGGAAAAGATGGCTTGAGAATATTCGTGATTGGTGCATTTCAAGGCAGCTTTGG
TGGGGTCACCGTATTCCTGCTTGGTATGTGAAACTGCACGATGATAAGCAGAAGGAATTT
GGTGTCTGTGATGATCACTGGATTGTCGCTAGAAATGAAGAAGAGGCTCGAGATTTGGCT
TGTAGGAAATTTTCAGGGAAAGAGATTGTTGAGCTCTCTCAAGATCCCGATGTCCTGGAT
ACCTGGTTTTCATCTGGTCTTTTTCCATTATCTGTATTGGGGTGGCCAGATGATACTGCG
GATTTAAAATCATTTTATCCAACTTCGGTTCTTGAAACTGGACATGATATTCTTTTCTTC
TGGGTTGCACGTATGGTGATGTTGGGGATAACGCTGGGAGGTGATGTACCATTTACGAAG
GTTTATTTGCATCCAATGATCCGTGATGCACAGGGACGTAAGATGTCCAAATCATTGGGA
AATGTTGTTGATCCTCTTGAAGTTATCAATGGAATTACCCTTGATGATCTTCATAAGAGA
TTAGAGGAGGGCAACCTGGACGCCAAAGAACTTGAGAGGGCAAAAGAGGGACATGCAAAG
GACTTTCCTAAAGGTATTCACGAATGTGGTGCAGATGCTCTTCGATTTGCCCTAGTCTCA
TATACTGGCCAGTCCGATAAGATCAATCTGGATATCCAGAGAGTGGTTGGGTATCGTGAA
TGGTGTAACAAACTATGGAATGCCATTAGGTTTGCCATGAGTAAACTGGGTGAAGATTAC
ACCCCTCCAACAAAGATAGTTCCTTGTGAAATGCCTTTTAGCTGCCAGTGGATACTCTCA
GCACTTAACAAGGCCATAGCGAAAACTGTCTCATCCCTTGAATCTTATGATTTCTCCGAT
GCAGCAACAGCGGTATATTCATTTTGGCAGTTCCAGTTGTGTGATGTGTTTATAGAAGTA
ATCAAGCCATACTTTGCCGGTGATAATCCAGAATTTGTATCTGCAAGAAGATTTGCTCAA
GACACTTTGTGGCTTTGTTTAGATAATGGGTTGAGATTACTCCATCCATTTATGCCGTTT
GTCACCGAAGAATTATGGCAGCGGCTTCCTGCTAGCGGGAATTCTATAAAGAAAGAATCT
ATAGTGATAAGTGATTATCCTTCAACTATAGAGAGCTGGAATAATGATAGTGTGGAAGCT
GAGATGGAAAAGGTTTCATCCATTGTTAAAGGACTGAGGTCGAAGAGGGCATTGTTGCCT
CCAAAGGAGAGATTTGCCAGGCTAGAAGCATTTGTGCTTTGCCGGACAATTGATACTGTG
GAGACCATTGCAAAACGCGAAATGGAGATTTGTACTCTAGCTACATTGTCATCTTTGAAG
GTCTCAAGTGACAGTGATGCAGCTCCAACTCGGTGGTTGACAGAAGTAGTGGATGAATCT
GTCACAGTTTTTCTCGAGGAAAAAGGGACTACTAGTAACTCAGAGGCTGAAATTGAAAGG
CTTGAAAAGAAGAGAGAAGAGACAAGGAAGCAATTTGAGAAGTTAAACAAAAGCATGATT
GCCTCTGGCTACAAAGAGAAAGTTGCGCCTAACGTCCATGAAGACAATATAGTGAAACTT
AGTGTCCTAAAGCAAGAACTGGAATCAATTGAAGAAAATATTGAGCGTCTCATGTTAAAT
TGA

Peptide Sequence

PEP ID

XP_016488568.1
PEP Infomation

PREDICTED: valine--tRNA ligase, mitochondrial 1-like isoform X4 [Nicotiana tabacum]
Sequence

MALAAAASDGKELTPEELERKKKKEEKAKEKELKKLKAAQKVELAAKQAQAASNVSKTAK
KKTSKREGEEKQNPKDYVEPETPLGEKKQLSCKMAKTYNPGVVEKSWYAWWEKSNFFTAD
PNNSKPAFVMVLPPPNVTGALHIGHALTAAIEDTIIRWRRMSGYNTLWIPGMDHAGIATQ
VVVEKKIMRERNLTRHDIGRENFKSQVWNWKNEYGGTILKQLRRLGASLDWSRECFTMDE
KRSKAVTEAFVRLSNKGLIYRAPRMVHWDCILRTAISDIEVEYTDIKERTLLNVPGYEDP
VEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPEDKRYSHLHGKFAIHPFNER
KLPIVCDEILVDMNFGTGAVKITPAHDPNDFEVGQRHKLEFISIFTDDGKINRNAGADFE
GMPRFKARVTVTEALKEKGLYRGAKDNEMRLGICSRSNDVVEPLIKPQWFVNCKSMAKQA
LDAVMDDDNRKMEIIPKQYAAEWKRWLENIRDWCISRQLWWGHRIPAWYVKLHDDKQKEF
GVCDDHWIVARNEEEARDLACRKFSGKEIVELSQDPDVLDTWFSSGLFPLSVLGWPDDTA
DLKSFYPTSVLETGHDILFFWVARMVMLGITLGGDVPFTKVYLHPMIRDAQGRKMSKSLG
NVVDPLEVINGITLDDLHKRLEEGNLDAKELERAKEGHAKDFPKGIHECGADALRFALVS
YTGQSDKINLDIQRVVGYREWCNKLWNAIRFAMSKLGEDYTPPTKIVPCEMPFSCQWILS
ALNKAIAKTVSSLESYDFSDAATAVYSFWQFQLCDVFIEVIKPYFAGDNPEFVSARRFAQ
DTLWLCLDNGLRLLHPFMPFVTEELWQRLPASGNSIKKESIVISDYPSTIESWNNDSVEA
EMEKVSSIVKGLRSKRALLPPKERFARLEAFVLCRTIDTVETIAKREMEICTLATLSSLK
VSSDSDAAPTRWLTEVVDESVTVFLEEKGTTSNSEAEIERLEKKREETRKQFEKLNKSMI
ASGYKEKVAPNVHEDNIVKLSVLKQELESIEENIERLMLN

Transcript Sequence

Gene sequence data has not been registered.